| 1 |
1.1.1 |
Escherichia coli and the French School of Molecular Biology |
AGNES ULLMANN |
|
| 2 |
1.1.2 |
Escherichia coli and the Emergence of Molecular Biology |
AGNES ULLMANN |
|
| 3 |
1.2 |
The Legacy of 20th Century Phage Research |
ALLAN M. CAMPBELL |
|
| 4 |
1.4 |
Escherichia coli and Salmonella 2000: the View From Here |
Moselio Schaechter and The View From Here Group2 |
|
| 5 |
10.2.1 |
Reconstruction and Use of Microbial Metabolic Networks: the Core Escherichia coli Metabolic Model as an Educational Guide |
JEFFREY D. ORTH, R. M. T. FLEMING, AND BERNHARD Ø. PALSSON |
|
| 6 |
2.2.2 |
Intracellular Voyeurism: Examining the Modulation of Host Cell Activities by Salmonella enterica Serovar Typhimurium |
JASON SZETO1 AND JOHN H. BRUMELL1,2 |
|
| 7 |
2.2.3 |
The Cytology of Bacterial Conjugation |
MATTHEW W. GILMOUR, TREVOR D. LAWLEY, AND DIANE E. TAYLOR |
|
| 8 |
2.2.4 |
Outer Membrane Vesicles |
AMANDA J. McBROOM AND META J. KUEHN |
|
| 9 |
2.2.6 |
Imaging Techniques for the Study of Escherichia coli and Salmonella Infections |
ELISABETH TORSTENSSON, PETER KJÄLL, AND AGNETA RICHTER-DAHLFORS |
|
| 10 |
2.4.2.1 |
Fimbriae: Classification and Biochemistry |
DAVID G. THANASSI,1 SEAN-PAUL NUCCIO,2 STEPHANE SHU KIN SO,1 AND ANDREAS J. BÄUMLER2 |
|
| 11 |
2.4.2.2 |
Regulation of Fimbrial Expression |
IAN BLOMFIELD1 AND MARJAN van der WOUDE2 |
|
| 12 |
2.5.1 |
How We Got to Where We Are: the Ribosome in the 21st Century |
PETER B. MOORE |
|
| 13 |
2.5.3 |
Assembly of the 30S Ribosomal Subunit |
GLORIA M. CULVER AND NARAYANASWAMY KIRTHI |
|
| 14 |
2.5.4 |
Structural Basis for the Decoding Mechanism |
STEVEN T. GREGORY |
|
| 15 |
2.5.6 |
Modification of the Ribosome and the Translational Machinery during Reduced Growth Due to Environmental Stress |
ANTÓN VILA-SANJURJO |
|
| 16 |
2.5.7 |
Antibiotic Resistance Mechanisms, with an Emphasis on Those Related to the Ribosome |
KATHERINE S. LONG1 AND BIRTE VESTER2 |
|
| 17 |
2.6 |
The Nucleoid: an Overview |
AKIRA ISHIHAMA |
|
| 18 |
3.1.1 |
Introduction and Perspectives |
UWE SAUER |
|
| 19 |
3.2.2 |
The Aerobic and Anaerobic Respiratory Chain of Escherichia coli and Salmonella enterica: Enzymes and Energetics |
GOTTFRIED UNDEN AND PIA DÜNNWALD |
|
| 20 |
3.2.3 |
ATP Synthesis by Oxidative Phosphorylation |
STEVEN B. VIK |
|
| 21 |
3.2.4 |
NADH as Donor |
THORSTEN FRIEDRICH AND THOMAS POHL |
|
| 22 |
3.2.5 |
Respiration of Nitrate and Nitrite |
JEFFREY A. COLE1 AND DAVID J. RICHARDSON2 |
|
| 23 |
3.2.6 |
Succinate as Donor; Fumarate as Acceptor |
THOMAS M. TOMASIAK,1 GARY CECCHINI,2 AND TINA M. IVERSON1 |
|
| 24 |
3.2.7 |
Oxygen as Acceptor |
VITALIY B. BORISOV1 AND MICHAEL I. VERKHOVSKY2 |
|
| 25 |
3.2.8 |
S- and N-Oxide Reductases |
VICTOR W. T. CHENG AND JOEL H. WEINER |
|
| 26 |
3.3.1 |
Solute and Ion Transport: Outer Membrane Pores and Receptors |
SATOSHI YAMASHITA AND SUSAN K. BUCHANAN |
|
| 27 |
3.3.2 |
Bacterial Ion Channels |
EMMA L. R. COMPTON AND JOSEPH A. MINDELL |
|
| 28 |
3.3.2.1 |
Ammonia Transport |
NED S. WINGREEN |
|
| 29 |
3.3.3 |
Binding Protein-Dependent Uptake of Maltose into Cells via an ATP-Binding Cassette Transporter |
AMY L. DAVIDSON AND FRANCES JOAN D. ALVAREZ |
|
| 30 |
3.4.1 |
Hexose/Pentose and Hexitol/Pentitol Metabolism |
CHRISTOPH MAYER AND WINFRIED BOOS |
|
| 31 |
3.4.2 |
Catabolism of Hexuronides, Hexuronates, Aldonates, and Aldarates |
M.-A. Mandrand-Berthelot, G. Condemine, and N. Hugouvieux-Cotte-Pattat |
|
| 32 |
3.4.3 |
Glycerol and Methylglyoxal Metabolism |
IAN R. BOOTH |
|
| 33 |
3.4.4 |
Two-Carbon Compounds and Fatty Acids as Carbon Sources |
DAVID P. CLARK1 AND JOHN E. CRONAN2 |
|
| 34 |
3.4.5 |
C4-Dicarboxylate Degradation in Aerobic and Anaerobic Growth |
Gottfried Unden and Alexandra Kleefeld |
|
| 35 |
3.4.6 |
Molecular Basis for Bacterial Growth on Citrate or Malonate |
P. Dimroth |
|
| 36 |
3.4.7 |
Catabolism of Amino Acids and Related Compounds |
LARRY REITZER |
|
| 37 |
3.5.1 |
Glycolysis and Flux Control |
TONY ROMEO1 AND JACKY L. SNOEP2,3 |
|
| 38 |
3.5.2 |
Tricarboxylic Acid Cycle and Glyoxylate Bypass |
JOHN E. CRONAN, JR.,1 AND DAVID LaPORTE2 |
|
| 39 |
3.5.3 |
Fermentative Pyruvate and Acetyl-Coenzyme A Metabolism |
R. Gary Sawers1 and David P. Clark2 |
|
| 40 |
3.5.4 |
Anaerobic Formate and Hydrogen Metabolism |
R. GARY SAWERS,1 MELANIE BLOKESCH,2 AND AUGUST BÖCK2 |
|
| 41 |
3.6.1 |
Amino Acid Metabolism and Fluxes |
G. WESLEY HATFIELD |
|
| 42 |
3.6.1.1 |
Selenocysteine |
A. Böck and M. Thanbichler |
|
| 43 |
3.6.1.1.1 |
Selenocysteine Lyase |
Thressa C. Stadtman |
|
| 44 |
3.6.1.1.2 |
Selenophosphate Synthetase |
Matt D. Wolfe |
|
| 45 |
3.6.1.10 |
Biosynthesis of Arginine and Polyamines |
Daniel Charlier 1 and Nicolas Glansdorff 2 |
|
| 46 |
3.6.1.11 |
Biosynthesis of Cysteine |
NICHOLAS M. KREDICH |
|
| 47 |
3.6.1.2 |
Regulation of Serine, Glycine, and One-Carbon Biosynthesis |
George V. Stauffer |
|
| 48 |
3.6.1.3 |
Biosynthesis of Glutamate, Aspartate, Asparagine, l-Alanine, and d-Alanine |
Larry Reitzer |
|
| 49 |
3.6.1.4 |
Biosynthesis of Proline |
LASZLO N. CSONKA1 AND THOMAS LEISINGER2 |
|
| 50 |
3.6.1.5 |
Biosynthesis and Regulation of the Branched-Chain Amino Acids |
KIRSTY A. SALMON,1 CHIN-RANG YANG,2 AND G. WESLEY HATFIELD1 |
|
| 51 |
3.6.1.6 |
Regulation of Glutamine Synthetase Activity |
EARL R. STADTMAN |
|
| 52 |
3.6.1.7 |
Methionine |
ELISE R. HONDORP1 AND ROWENA G. MATTHEWS1,2 |
|
| 53 |
3.6.1.8 |
Biosynthesis of the Aromatic Amino Acids |
JAMES PITTARD AND JI YANG |
|
| 54 |
3.6.1.9 |
Biosynthesis of Histidine |
MALCOLM E. WINKLER AND SMIRLA RAMOS-MONTAÑEZ |
|
| 55 |
3.6.2 |
Nucleotides, Nucleosides, and Nucleobases |
KAJ FRANK JENSEN, GERT DANDANELL, BJARNE HOVE-JENSEN, AND MARTIN WILLEMOËS |
|
| 56 |
3.6.3.10 |
Biogenesis and Homeostasis of Nicotinamide Adenine Dinucleotide Cofactor |
ANDREI OSTERMAN |
|
| 57 |
3.6.3.11 |
Biosynthesis of Hemes |
SAMUEL I. BEALE |
|
| 58 |
3.6.3.12 |
Cytochrome c Biogenesis |
JULIE M. STEVENS AND STUART J. FERGUSON |
|
| 59 |
3.6.3.13 |
Biosynthesis and Insertion of the Molybdenum Cofactor |
AXEL MAGALON1 AND RALF R. MENDEL2 |
|
| 60 |
3.6.3.14 |
From Iron and Cysteine to Iron-Sulfur Clusters: the Biogenesis Protein Machineries |
MARC FONTECAVE,1,2,3 BÉATRICE PY,4,5 SANDRINE OLLAGNIER de CHOUDENS,1,2,3 AND FRÉDÉRIC BARRAS4,5 |
|
| 61 |
3.6.3.2 |
Biosynthesis of Riboflavin |
MARKUS FISCHER1 AND ADELBERT BACHER2 |
|
| 62 |
3.6.3.3 |
Biosynthesis of Menaquinone (Vitamin K2) and Ubiquinone (Coenzyme Q) |
R. MEGANATHAN1 AND OHSUK KWON2 |
|
| 63 |
3.6.3.4 |
Biosynthesis of Pantothenic Acid and Coenzyme A |
ROBERTA LEONARDI AND SUZANNE JACKOWSKI |
|
| 64 |
3.6.3.5 |
Biotin and Lipoic Acid: Synthesis, Attachment, and Regulation |
JOHN E. CRONAN |
|
| 65 |
3.6.3.6 |
Folate Biosynthesis, Reduction, and Polyglutamylation and the Interconversion of Folate Derivatives |
JACALYN M. GREEN1 AND ROWENA G. MATTHEWS2 |
|
| 66 |
3.6.3.7 |
Biosynthesis of Thiamin Pyrophosphate |
CHRISTOPHER T. JURGENSON, STEVEN E. EALICK, AND TADHG P. BEGLEY |
|
| 67 |
3.6.3.8 |
Biosynthesis and Use of Cobalamin (B12) |
JORGE C. ESCALANTE-SEMERENA1 AND MARTIN J. WARREN2 |
|
| 68 |
3.6.4 |
Biosynthesis of Membrane Lipids |
JOHN E. CRONAN, JR.,1 AND CHARLES O. ROCK2 |
|
| 69 |
4.2.2 |
Translation Initiation |
Yves Méchulam, Sylvain Blanquet, and Emmanuelle Schmitt |
|
| 70 |
4.3.2 |
The Tat Protein Export Pathway |
TRACY PALMER,1 FRANK SARGENT,1 AND BEN C. BERKS2 |
|
| 71 |
4.3.4 |
Type II Secretion in Escherichia coli |
MARCELLA PATRICK, MIRANDA D. GRAY, MARIA SANDKVIST, AND TANYA L. JOHNSON |
|
| 72 |
4.3.6 |
Type V Secretion: the Autotransporter and Two-Partner Secretion Pathways |
HARRIS D. BERNSTEIN |
|
| 73 |
4.3.7 |
Biogenesis and Membrane Targeting of Lipoproteins |
SHIN-ICHIRO NARITA AND HAJIME TOKUDA |
|
| 74 |
4.3.8 |
Assembly of Outer Membrane β-Barrel Proteins: the Bam Complex |
JULIANA C. MALINVERNI AND THOMAS J. SILHAVY |
|
| 75 |
4.4.1 |
Initiation of DNA Replication |
ALAN C. LEONARD AND JULIA E. GRIMWADE |
|
| 76 |
4.4.2 |
Replisome Dynamics during Chromosome Duplication |
ISABEL KURTH AND MIKE O'DONNELL |
|
| 77 |
4.4.5 |
DNA Methylation |
M. G. MARINUS1 AND A. LØBNER-OLESEN2 |
|
| 78 |
4.4.7 |
The DNA Exonucleases of Escherichia coli |
Susan T. Lovett |
|
| 79 |
4.4.8 |
DNA Helicases |
PIERO R. BIANCO |
|
| 80 |
4.4.9 |
DNA Topoisomerases |
KATHERINE EVANS-ROBERTS AND ANTHONY MAXWELL |
|
| 81 |
4.5.2.2 |
Promoter Escape by Escherichia coli RNA Polymerase |
LILIAN M. HSU |
|
| 82 |
4.5.3.1 |
Nus Factors of Escherichia coli |
RANJAN SEN, JISHA CHALISSERY, AND GHAZALA MUTEEB |
|
| 83 |
4.6.1 |
Modified Nucleosides of Escherichia coli Ribosomal RNA |
JAMES OFENGAND AND MARK DEL CAMPO |
|
| 84 |
4.6.2 |
Transfer RNA Modification |
GLENN R. BJÖRK AND TORD G. HAGERVALL |
|
| 85 |
4.6.3 |
Exoribonucleases and Endoribonucleases |
ZHONGWEI LI1 AND MURRAY P. DEUTSCHER2 |
|
| 86 |
4.6.4 |
Messenger RNA Decay |
SIDNEY R. KUSHNER |
|
| 87 |
4.7.1.5 |
Peptidoglycan Recycling |
TSUYOSHI UEHARA AND JAMES T. PARK |
|
| 88 |
4.7.1.7 |
Undecaprenyl Phosphate Synthesis |
THIERRY TOUZÉ AND DOMINIQUE MENGIN-LECREULX |
|
| 89 |
4.7.3 |
Structure and Assembly of Escherichia coli Capsules |
CHRIS WHITFIELD |
|
| 90 |
4.7.4 |
Glycogen: Biosynthesis and Regulation |
JACK PREISS |
|
| 91 |
5.2.3 |
Modulation of Chemical Composition and Other Parameters of the Cell at Different Exponential Growth Rates |
HANS BREMER1 AND PATRICK P. DENNIS2 |
|
| 92 |
5.4.2 |
The Cold Shock Response |
SANGITA PHADTARE AND MASAYORI INOUYE |
|
| 93 |
5.4.3 |
The SOS Regulatory Network |
LYLE A. SIMMONS, JAMES J. FOTI, SUSAN E. COHEN, AND GRAHAM C. WALKER |
|
| 94 |
5.4.4 |
Oxidative Stress |
JAMES A. IMLAY |
|
| 95 |
5.4.4.1 |
Copper Homeostasis in Escherichia coli and Other Enterobacteriaceae |
CHRISTOPHER RENSING AND SYLVIA FRANKE |
|
| 96 |
5.4.4.2 |
Magnesium Transport and Magnesium Homeostasis |
KRISZTINA M. PAPP-WALLACE AND MICHAEL E. MAGUIRE |
|
| 97 |
5.4.4.3 |
Transition Metal Homeostasis |
DIETRICH H. NIES AND GREGOR GRASS |
|
| 98 |
5.4.5 |
Osmotic Stress |
KARLHEINZ ALTENDORF,1 IAN R. BOOTH,2 JAY GRALLA,3 JÖRG-CHRISTIAN GREIE,1 ADAM Z. ROSENTHAL,3 AND JANET M. WOOD4 |
|
| 99 |
5.4.7 |
Envelope Stress Responses |
DAWN M. MACRITCHIE AND TRACY L. RAIVIO |
|
| 100 |
5.5 |
Cell-to-Cell Signaling in Escherichia coli and Salmonella |
MELISSA M. KENDALL AND VANESSA SPERANDIO |
|
| 101 |
5.6.3 |
Stationary-Phase Gene Regulation in Escherichia coli? |
Regine Hengge |
|
| 102 |
5.6.6 |
The Origin of Mutants under Selection: Interactions of Mutation, Growth, and Selection |
DAN I. ANDERSSON,1 DIARMAID HUGHES,2 AND JOHN R. ROTH3 |
|
| 103 |
6.4.1 |
The Influence of Ecological Factors on the Distribution and the Genetic Structure of Escherichia coli |
David M. Gordon |
|
| 104 |
6.4.6 |
Evolution and Ecology of Salmonella |
Mollie D. Winfield and Eduardo A. Groisman |
|
| 105 |
6.4.8 |
The Ecology and Evolution of Microbial Defense Systems in Escherichia coli |
Margaret A. Riley, John E. Wertz, and Carla Goldstone |
|
| 106 |
6.5 |
The Escherichia coli Proteome: Past, Present, and Future Prospects |
MEE-JUNG HAN1 AND SANG YUP LEE1,2 |
|
| 107 |
7.2.6 |
Homologous Recombination-Experimental Systems, Analysis, and Significance |
Andrei Kuzminov |
|
| 108 |
8.3.1.2 |
The Life of Commensal Escherichia coli in the Mammalian Intestine |
TYRELL CONWAY,1 KAREN A. KROGFELT,2 AND PAUL S. COHEN3 |
|
| 109 |
8.3.1.3 |
Colonization of Abiotic Surfaces |
CHRISTOPHE BELOIN, SANDRA DA RE, AND JEAN-MARC GHIGO |
|
| 110 |
8.3.2.1.2 |
Adhesins of Enterotoxigenic Escherichia coli Strains That Infect Animals |
DIETER M. SCHIFFERLI |
|
| 111 |
8.3.2.2 |
Adhesins of Diffusely Adherent and Enteroaggregative Escherichia coli |
CHANTAL le BOUGUÉNEC1 AND JAMES P. NATARO2 |
|
| 112 |
8.3.2.3 |
Adhesins of Enterohemorrhagic Escherichia coli |
MARK P. STEVENS AND TIMOTHY S. WALLIS |
|
| 113 |
8.3.2.4 |
Adhesins of Enteropathogenic Escherichia coli |
ALFREDO G. TORRES |
|
| 114 |
8.3.2.6 |
Type 1 Fimbriae, Curli, and Antigen 43: Adhesion, Colonization, and Biofilm Formation |
PER KLEMM1 AND MARK SCHEMBRI2 |
|
| 115 |
8.6.1.2 |
Meningitis-Associated Escherichia coli |
KWANG SIK KIM |
|
| 116 |
8.6.1.3 |
Uropathogenic Escherichia coli |
HARRY L. T. MOBLEY,1 MICHAEL S. DONNENBERG,2 AND ERIN C. HAGAN1 |
|
| 117 |
8.6.1.4 |
Molecular Epidemiology of Extraintestinal Pathogenic Escherichia coli |
JAMES R. JOHNSON1 AND THOMAS A. RUSSO2 |
|
| 118 |
8.6.2.1 |
Salmonella Epidemiology and Pathogenesis in Food-Producing Animals |
TIMOTHY S. WALLIS AND PAUL A. BARROW |
|
| 119 |
8.6.2.2 |
Invasive Salmonellosis in Humans |
GEMMA C. LANGRIDGE, JOHN WAIN, AND SATHEESH NAIR |
|
| 120 |
8.7.2 |
The Escherichia coli Hemolysin |
RODNEY A. WELCH |
|
| 121 |
8.7.3 |
Autotransporter Proteins |
IAN R. HENDERSON1 AND JAMES P. NATARO2 |
|
| 122 |
8.7.4 |
Cytotoxic Necrotizing Factors: Rho-Activating Toxins from Escherichia coli |
GUDULA SCHMIDT AND KLAUS AKTORIES |
|
| 123 |
8.7.5 |
Heat-Labile Enterotoxins |
MICHAEL G. JOBLING AND RANDALL K. HOLMES |
|
| 124 |
8.7.8 |
Shiga Toxins: Potent Poisons, Pathogenicity Determinants, and Pharmacological Agents |
A. R. MELTON-CELSA, M. J. SMITH, AND A. D. O'BRIEN |
|
| 125 |
8.8.10 |
Modulation of Iron Availability at the Host-Pathogen Interface in Phagocytic Cells |
JOHN FORBES, STEVEN LAM-YUK-TSEUNG, AND PHILIPPE GROS |
|
| 126 |
8.8.11 |
Adaptive Immune Responses during Salmonella Infection |
LISA A. CUMMINGS,1 BROOKE L. DEATHERAGE,2 AND BRAD T. COOKSON1,2 |
|
| 127 |
8.8.12 |
Mucosal Immune Responses to Escherichia coli and Salmonella Infections |
ODILIA L. C. WIJBURG AND RICHARD A. STRUGNELL |
|
| 128 |
8.8.13 |
Salmonella as an Inducer of Autoimmunity |
MARK J. SOLOSKI1 AND ELEANOR S. METCALF2 |
|
| 129 |
8.8.14 |
Vaccines against Infections Caused by Salmonella, Shigella, and Pathogenic Escherichia coli |
CARLOS A. GUZMAN,1 STEFAN BORSUTZKY,1 DIDIER FAVRE,2 AND GUIDO DIETRICH2 |
|
| 130 |
8.8.15 |
Cytokines and Escherichia coli Sepsis |
CHLOÉ KAECH,1 PIERRE-YVES BOCHUD,2 AND THIERRY CALANDRA1 |
|
| 131 |
8.8.3 |
NLRs: Nucleotide-Binding Domain and Leucine-Rich-Repeat-Containing Proteins |
LETICIA A. M. CARNEIRO,1 JÖRG H. FRITZ,2 THOMAS A. KUFER,3 LEONARDO H. TRAVASSOS,2 SZILVIA BENKO,1 AND DANA J. PHILPOTT2 |
|
| 132 |
8.8.4 |
Salmonella and Enteropathogenic Escherichia coli Interactions with Host Cells: Signaling Pathways |
DANIKA L. GOOSNEY,1,2§ SONYA L. KUJAT CHOY,1§ AND B. BRETT FINLAY1 |
|
| 133 |
8.8.5 |
Cytokines in Salmonellosis |
PIETRO MASTROENI AND CLARE BRYANT |
|
| 134 |
8.8.8 |
Nitric Oxide in Salmonella and Escherichia coli Infections |
ANDRÉS VÁZQUEZ-TORRES1 AND FERRIC C. FANG2 |
|
| 135 |
8.9.1 |
Virulence Gene Regulation in Escherichia coli |
JAY L. MELLIES AND ALEX M. S. BARRON |
|
| 136 |
8.9.3 |
Virulence Gene Regulation in Shigella |
CHARLES J. DORMAN |
|
